Research
Gene Regulatory Networks, Gene Regulatory Network
Sea Cucumber
Comparative Study, Comparative Studies
Rna Sequencing
Scientific Standard
Spatial Control
Supplementary Information
Developing Nervous System
Transgenic Mice
Early Career Researchers
Larval Development
Conserved Gene
Gene Regulatory Mechanisms
Gene Networks
Transcription Factors, Transcription Factor
Retinoic Acid
Developmental Biology
Developmental Gene, Developmental Genes
Ecological Regulation
Central Role
Million Years
Animal Development
Changing Role
List of Publications (61)
In 2016
61
Eric Davidson (1937-2015) and the past, present and future of EvoDevo. V Hinman Evolution & development 18 (2), 67-68, 2016.
Found on Publication Page
60
A gene regulatory network for apical organ neurogenesis and its spatial control in sea star embryos. A Jarvela, K Yankura, V Hinman bioRxiv, 036624, 2016.
Found on Publication Page
In 2015
59
Dose-dependent nuclear -catenin response segregates endomesoderm along the sea star primary axis. BS McCauley, E Akyar, HR Saad, VF Hinman Development 142 (1), 207-217, 2015.
Found on Publication Page
58
Unraveling the tangled skein: the evolution of transcriptional regulatory networks in development. M Rebeiz, NH Patel, VF Hinman Annual review of genomics and human genetics 16, 103-131, 2015.
Found on Publication Page
57
Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks. AMC Jarvela, VF Hinman EvoDevo 6 (1), 1, 2015.
Found on Publication Page
In 2014
56
Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF. Modular Evolution of DNA-Binding Preference of a Tbrain Transcription Factor Provides a Mechanism for Modifying Gene Regulatory Networks. Mol Biol Evol. 2014 Jul 12
Found on Publication Text
55
Relating the pentaradial starfish body plan to the bilaterian anterior posterior axis. J Levine, B Mccauley, V Hinman, C Lowe INTEGRATIVE AND COMPARATIVE BIOLOGY 54, E305-E305, 2014.
Found on Publication Page
54
A method for microinjection of Patiria minata Zygotes. AMC Jarvela, V Hinman JoVE (Journal of Visualized Experiments), e51913-e51913, 2014.
Found on Publication Page
53
Developmental gene regulatory network evolution: Insights from comparative studies in echinoderms. VF Hinman, AM Cheatle Jarvela genesis 52 (3), 193-207, 2014.
Found on Publication Page
52
Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. AMC Jarvela, L Brubaker, A Vedenko, A Gupta, BA Armitage, ML Bulyk, ... Molecular biology and evolution 31 (10), 2672-2688, 2014.
Found on Publication Page
In 2013
50
Open Scholarship for Graduate Students and Early Career Researchers. K Webster, JD Creswell, MJ Tarr, VF Hinman, J Kovacevic, M Shaw, ... .
Found on Publication Page
49
Expression of wnt and frizzled genes during early sea star development. BS McCauley, E Akyar, L Filliger, VF Hinman Gene Expression Patterns 13 (8), 437-444, 2013.
Found on Publication Page
48
Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning. KA Yankura, CS Koechlein, AF Cryan, A Cheatle, VF Hinman Proceedings of the National Academy of Sciences 110 (21), 8591-8596, 2013.
Found on Publication Page
47
Probabilistic error correction for RNA sequencing. HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research, gkt215, 2013.
Found on Publication Page
In 2012
46
McCauley BS, Wright EP, Exner C, Kitazawa C, Hinman VF. Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms. Evodevo. 2012 Aug 9;3(1):17. doi: 10.1186/2041-9139-3-17.
Found on Publication Text
45
Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms. BS McCauley, EP Wright, C Exner, C Kitazawa, VF Hinman EvoDevo 3 (1), 1, 2012.
Found on Publication Page
In 2011
44
Through their evaluation of manuscripts, the referees contribute greatly to the scientific standard of our journal. As a sign of our appreciation of this unselfish activity, we have decided to publish a list of referees. The following referees reviewed papers that were published in volume 221. LM Angerer, H Araujo, E Bach, J Bagun, A Bardin, G Bicker, M Blum, ... Dev Genes Evol 221, 363-364, 2011.
Found on Publication Page
43
Through their evaluation of manuscripts, the referees contribute greatly to the scientific standard of our journal. As a sign of our appreciation of this unselfish activity, we have decided to publish a list of referees. The following referees reviewed papers that were published in volume 220. J Achatz, M Affolter, K Agata, F Alwes, O Andersen, G Bicker, PR Biga, ... Dev Genes Evol 220, 355, 2011.
Found on Publication Page
42
RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star. S Kadri, VF Hinman, PV Benos PLoS one 6 (12), e29217, 2011.
Found on Publication Page
In 2010
41
Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms. KA Yankura, ML Martik, CK Jennings, VF Hinman BMC biology 8 (1), 1, 2010.
Found on Publication Page
40
A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos. BS McCauley, EP Weideman, VF Hinman Developmental biology 340 (2), 200-208, 2010.
Found on Publication Page
In 2009
39
Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms. VF Hinman, KA Yankura, BS McCauley Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1789 (4), 326-332, 2009.
Found on Publication Page
38
HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models. S Kadri, V Hinman, PV Benos BMC bioinformatics 10 (Suppl 1), S35, 2009.
Found on Publication Page
In 2007
37
Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins. VF Hinman, A Nguyen, EH Davidson Developmental biology 312 (2), 584-595, 2007.
Found on Publication Page
36
Evolutionary plasticity of developmental gene regulatory network architecture. VF Hinman, EH Davidson Proceedings of the National Academy of Sciences 104 (49), 19404-19409, 2007.
Found on Publication Page
In 2006
35
Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity. C Larroux, B Fahey, D Liubicich, VF Hinman, M Gauthier, M Gongora, ... Evolution & development 8 (2), 150-173, 2006.
Found on Publication Page
In 2005
34
Expression of AmHNF6, a sea star orthologue of a transcription factor with multiple distinct roles in sea urchin development. O Otim, VF Hinman, EH Davidson Gene expression patterns 5 (3), 381-386, 2005.
Found on Publication Page
In 2004
33
Evolution and developmental expression of nuclear receptor genes in the ascidian Herdmania. C Devine, VF Hinman, BM Degnan International Journal of Developmental Biology 46 (4), 687-692, 2004.
Found on Publication Page
32
Ecological regulation of development: induction of marine invertebrate metamorphosis. D Jackson, SP Leys, VF Hinman, R Woods, MF Lavin, BM Degnan International Journal of Developmental Biology 46 (4), 679-686, 2004.
Found on Publication Page
In 2003
31
Developmental genes in sponges and the antiquity of animal development. BM Degnan, SP Leys, C Larroux, VF Hinman Integrative and Comparative Biology 43 (6), 989-989, 2003.
Found on Publication Page
30
Expression of a gene encoding a Gata transcription factor during embryogenesis of the starfish Asterina miniata. VF Hinman, EH Davidson Gene expression patterns 3 (4), 419-422, 2003.
Found on Publication Page
29
Expression of AmKrox, a starfish ortholog of a sea urchin transcription factor essential for endomesodermal specification. VF Hinman, EH Davidson Gene expression patterns 3 (4), 423-426, 2003.
Found on Publication Page
28
Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa. VF Hinman, AT Nguyen, EH Davidson Mechanisms of development 120 (10), 1165-1176, 2003.
Found on Publication Page
27
Expression of anterior Hox genes during larval development of the gastropod Haliotis asinina. VF Hinman, EK O'Brien, GS Richards, BM Degnan Evolution & development 5 (5), 508-521, 2003.
Found on Publication Page
26
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution. VF Hinman, AT Nguyen, RA Cameron, EH Davidson Proceedings of the National Academy of Sciences 100 (23), 13356-13361, 2003.
Found on Publication Page
In 2002
25
Galliot, Brigitte, 377 Garcia-Fernandez, Jordi, 455 Gerton, George L., 480 Griffin, Gareth, 86. TL Gumienny, AM Arias, MI Arnone, J Barasch, E Bloch-Gallego, A Blum, ... Developmental Biology 246, 496, 2002.
Found on Publication Page
24
Evolution and developmental expression of nuclear receptor genes in the ascidian Herdmania. VFHBMD Christine Devine .
Found on Publication Page
23
Mox homeobox expression in muscle lineage of the gastropod Haliotis asinina: evidence for a conserved role in bilaterian myogenesis. V Hinman, B Degnan Development genes and evolution 212 (3), 141-144, 2002.
Found on Publication Page
22
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, ... Developmental biology 246 (1), 162-190, 2002.
Found on Publication Page
21
A genomic regulatory network for development. EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, ... science 295 (5560), 1669-1678, 2002.
Found on Publication Page
In 2001
20
A Genomic Regulatory Network for. EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, ... .
Found on Publication Page
19
Homeobox genes, retinoic acid and the development and evolution of dual body plans in the ascidian Herdmania curvata. VF Hinman, BM Degnan American Zoologist 41 (3), 664-675, 2001.
Found on Publication Page
In 2000
18
Homeobox genes and retinoic acid in the development of the ascidian Herdmania curvata: Evolution of body plan transitions. VF Hinman University of Queensland, 2000.
Found on Publication Page
17
Neuroectodermal and endodermal expression of the ascidian Cdx gene is separated by metamorphosis. VF Hinman, E Becker, BM Degnan Development genes and evolution 210 (4), 212-216, 2000.
Found on Publication Page
16
Retinoic acid perturbs Otx gene expression in the ascidian pharynx. VF Hinman, BM Degnan Development genes and evolution 210 (3), 129-139, 2000.
Found on Publication Page
15
Expression of a Scr/Hox5 gene in the larval central nervous system of the gastropod Haliotis, a nonsegmented spiralian lophotrochozoan. AF Giusti, VF Hinman, SM Degnan, BM Degnan, DE Morse Evolution & development 2 (5), 294-302, 2000.
Found on Publication Page
In 1999
14
Homeobox genes in ascidian development: Evolution through heterochrony. V Hinman, B Degnan American Zoologist 39 (5), 89A-89A, 1999.
Found on Publication Page
13
Which way up? Phototaxis and polarity in a sponge. SP Leys, VF Hinman, BM Degnan American Zoologist 39 (5), 38A-38A, 1999.
Found on Publication Page
12
Hemps, a novel EGF-like protein, plays a central role in ascidian metamorphosis. R Eri, JM Arnold, VF Hinman, KM Green, MK Jones, BM Degnan, ... Development 126 (24), 5809-5818, 1999.
Found on Publication Page
In 1998
11
Retinoic acid disrupts anterior ectodermal and endodermal development in ascidian larvae and postlarvae. VF Hinman, BM Degnan Development genes and evolution 208 (6), 336-345, 1998.
Found on Publication Page
In 1997
10
Changes in homeobox gene expression precede the transformation of the ascidian body plan at metamorphosis. BM Degnan, VF Hinman Developmental Biology 186 (2), A3-A3, 1997.
Found on Publication Page
9
Retinoic acid disrupts anterior ectodermal and endodermal development in ascidian embryos and postlarvae: Implications for the changing role of retinoic acid during chordate evolution. VF Hinman, BM Degnan Developmental Biology 186 (2), A19-A19, 1997.
Found on Publication Page
Unspecified
4
EA Lumpkin, T. Collisson, P. Parab, A. Omer-Abdalla, H. Haeberle, P. Chen, A. Doetzlhofer, P. White, A. Groves, N. Segil, JE Johnson (USA) Math1-driven GFP expression in the developing nervous system of transgenic mice 389. XH Zhou, O Brandau, K Feng, T Oohashi, BJ Martinsen, NJ Groebner, ... .
Found on Publication Page
3
Supplementary Information for:HHMMiR: Efficient de novo Prediction of MicroRNAs using Hierarchical Hidden Markov Models. S Kadri, V Hinman, PV Benos .
Found on Publication Page
2
Justification for the Support of Echinobase and Associated Genome Resources: Enhancing the Impact of Echinoderm Model Systems for Biosciences. RA Cameron, C Ettensohn, V Hinman .
Found on Publication Page
1
McCauley BS, Akyar E, Filliger LZ, Hinman VF. Expression of Wnt and Frizzled genes in the embryos of the sea star Patiria miniata. (in press).
Found on Publication Text
